PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 492279
Common NameARALYDRAFT_492279
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 206aa    MW: 22915.7 Da    PI: 4.6475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
492279genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-184190255
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
             y+GVr++  +g+Wv+e+r+p   +k++r++lg+f tae+Aa+a++ a+ +l+g
  492279 41 IYRGVRRRN-SGKWVCELREP---NKKTRIWLGTFQTAEMAARAHDVAAIALRG 90
            69****888.8*********8...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-134090IPR001471AP2/ERF domain
CDDcd000184.11E-3340100No hitNo description
Gene3DG3DSA:3.30.730.103.1E-3241100IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2241100IPR016177DNA-binding domain
PROSITE profilePS5103222.3134198IPR001471AP2/ERF domain
SMARTSM003803.5E-3241104IPR001471AP2/ERF domain
PRINTSPR003671.3E-94253IPR001471AP2/ERF domain
PRINTSPR003671.3E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MFGSDYESSV SSGGDYSPTL ATSCPKKPAG RKKFRETRHP IYRGVRRRNS GKWVCELREP  60
NKKTRIWLGT FQTAEMAARA HDVAAIALRG RSACLNFADS AWRLRIPEST CAKEIQKAAA  120
EAALAFQDEM CDMTTDHGLD MEETMVEAIV TAEQSDAFYL DDEAIFGMSS LLDNMAEGML  180
LPSPSVQWNY NFDVEGDDDL SLWSY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00452DAPTransfer from AT4G25470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5231960.0EF523196.1 Arabidopsis lyrata subsp. petraea C-repeat binding factor 3 (CBF3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867607.11e-154hypothetical protein ARALYDRAFT_492279
SwissprotQ9SYS61e-143DRE1C_ARATH; Dehydration-responsive element-binding protein 1C
TrEMBLD7MG021e-154D7MG02_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.7__1712__AT4G25470.11e-153(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-134C-repeat/DRE binding factor 2